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Series GSE51077 Query DataSets for GSE51077
Status Public on Aug 22, 2016
Title The tissue is the issue: Improved methylome analysis from paraffin-embedded tissues by application of the HOPE-technique
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome wide DNA methylation profiling of DNA samples obtained from normal lung tissue and lung carcinoma, either fixed by formalin (FFPE), HOPE (paraffin embedded) or cryo-preserved. Illumina's HumanMethylation450 BeadChip was used to obtain DNA methylation profiles across approximately 450.000 CpGs.
Overall design Bisulphite converted DNA from the 36 samples were hybridized to the Illumina HumanMethylation450 Beadchip.
Contributor(s) Ammerpohl O, Goldmann T
Citation(s) 24933424
Submission date Sep 23, 2013
Last update date Mar 22, 2019
Contact name Ole Ammerpohl
Organization name UK Ulm
Street address Albert-Einstein-Allee 11
City Ulm
ZIP/Postal code 89081
Country Germany
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (36)
GSM1237743 normal lung, cryo-preserved (15136)
GSM1237744 normal lung, formalin fixed, paraffin embedded (15136)
GSM1237745 normal lung, HOPE fixed, paraffin embedded (15136)
BioProject PRJNA221136

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE51077_RAW.tar 183.1 Mb (http)(custom) TAR
GSE51077_signal_intensities.txt.gz 149.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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