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Series GSE51045 Query DataSets for GSE51045
Status Public on Nov 25, 2013
Title Genome-wide mapping of SMRT (silencing mediator of retinoid and thyroid hormone receptors) occupancy in mouse liver at different Zeitgeber times (ZTs).
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We mapped SMRT binding on the genome in mouse livers and found no obvious circadian rhythm.
Overall design 12-weeks old C57BL/6 male mice were fed ad libum. Livers were harvested at 5 pm (ZT 10) and 5 am (ZT 22) with 4 mice in each group. Anti-SMRT ChIP was performed independently in each mouse and pooled together for deep sequencing.
Contributor(s) You S, Lim H, Sun Z, Won K, Lazar MA
Citation(s) 24268577
Submission date Sep 20, 2013
Last update date May 15, 2019
Contact name Hee-Woong Lim
Organization name Cincinnati Children's Hospital Medical Center
Department Division of Biomedical Informatics
Street address 3333 Burnet Ave. MLC 7024
City Cincinnati
State/province Ohio
ZIP/Postal code 45229
Country USA
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (2)
GSM1236494 SMRT ChIPSeq 5PM (ZT10)
GSM1236495 SMRT ChIPSeq 5AM (ZT22)
BioProject PRJNA219745
SRA SRP030120

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE51045_RAW.tar 560.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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