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Series GSE50901 Query DataSets for GSE50901
Status Public on Nov 01, 2014
Title Expression profiling identifies deregulated pathways and top diagnostic markers in papillary thyroid carcinoma
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Expression microarray was used to compare 57 PTC with a reference sample (pool of 9 adjacent normal thyroid tissue) and 4 PTC against 4 matched adjacent normal thyroid tissue. A quality control filter was applied based on Feature Extraction flags (empty spaces replacing values)
Overall design Experiment condition, 61 PTC and 4 adjacent normal thyroid tissue samples obtained from total thyroidectomies were laleled with Cy3 and a pool of 9 adjacent normal thyroid tissue was labeled with Cy5. Samples Cy3 and Cy5 were mixed and hybridized at slide glasses Agilent 8x60k platform.
Contributor(s) Barros Filho MC, Marchi FA
Citation(s) 25867809, 32425887
Submission date Sep 16, 2013
Last update date May 26, 2020
Contact name mateus camargo barros filho
Organization name AC Camargo Cancer Center
Street address Tagua Street 440
City Sao Paulo
State/province SP
ZIP/Postal code 05409011
Country Brazil
Platforms (1)
GPL13607 Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Feature Number version)
Samples (65)
GSM1232174 316N non-tumor matched with 316T
GSM1232175 316T tumor matched with 316N
GSM1232176 386N non-tumor matched with 386T
BioProject PRJNA219333

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE50901_RAW.tar 1.4 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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