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Series GSE50797 Query DataSets for GSE50797
Status Public on Mar 27, 2014
Title Analysis of the DNA methylome and transcriptome in granulopoiesis reveal timed changes and dynamic enhancer methylation
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary The study investigated the changes in DNA-methylation and gene expression during granulopoiesis. To this end CMP, GMP, PMC and PMN cell populations were isolated by FACS from bone marrow from healthy donors and analysed by CAGE as well as expression and DNA microarrays.
Overall design Bisulphite converted DNA from biological triplicate samples of CMP, GMP, PMC and PMN cell poplulations were hybridised to the Illumina Infinium 450k Human Methylation Beadchip.
Contributor(s) Rönnerblad M, Olofsson T, Andersson R, Douagi I, Karimi M, Lehmann S, Hoof I, Sandelin A, Itoh M, Nago-Sato S, Kawaji H, Lassmann T, Carninici P, Hayashizaki Y, Forrest AR, Ekwall K, Arner E, Lennartsson A
Citation(s) 24671952
Submission date Sep 11, 2013
Last update date Mar 22, 2019
Contact name Karl Ekwall
Phone +46 8 6089133
Organization name Karolinska Inst
Street address Alfred Nobels Alle 7
City Stockholm
ZIP/Postal code S-141 89
Country Sweden
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (12)
GSM1229453 CMP cells donor 1
GSM1229454 CMP cells donor 2
GSM1229455 CMP cells donor 3
BioProject PRJNA219099

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE50797_RAW.tar 183.1 Mb (http)(custom) TAR
GSE50797_methylated_unmethylated_signal_intensities.txt.gz 30.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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