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Series GSE50129 Query DataSets for GSE50129
Status Public on Nov 18, 2013
Title Genome-wide maps of Runx3 bound regions in IL-2-activated splenic NK cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq was conducted using splenic WT NK cells cultured for 7 days with IL-2 using anti-Runx3 antibodies (Ab), anti-H3K4me1 Ab and non-immune serum (NIS) as control.
Overall design Two biological Runx3, one H3K4me1 and two NIS IP repeats from splenic NK cells isolated from individual mice by negative selection using NK cell isolation kit (R&D) cultured with IL-2.
Contributor(s) Levanon D, Leshkowitz D, Groner Y
Citation(s) 24236182
Submission date Aug 22, 2013
Last update date May 15, 2019
Contact name Joseph Lotem
Phone 972-8-934-2342
Organization name Weizmann institute of science
Department Molecular genetics
Street address P.O.B 26
City Rehovot
ZIP/Postal code 76100
Country Israel
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (5)
GSM1214539 Runx3_IL2NK_CHIP_Runx3_IP1
GSM1214540 Runx3_IL2NK_CHIP_Runx3_IP2
GSM1214541 Runx3_IL2NK_CHIP_NIS1
This SubSeries is part of SuperSeries:
GSE50131 The transcription program of Runx3 in natural killer cells and CD8+ T cells
BioProject PRJNA216112
SRA SRP029170

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE50129_IL2_NK_H3K4me1_peaks_to_small.bed.gz 273.9 Kb (ftp)(http) BED
GSE50129_IL2_NK_Runx3_peaks_to_small.bed.gz 131.9 Kb (ftp)(http) BED
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Raw data are available in SRA
Processed data are available on Series record

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