GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE50128 Query DataSets for GSE50128
Status Public on Nov 18, 2013
Title Genome-wide maps of Runx3 bound regions in splenic IL-2-activated CD8+ T cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq was conducted on isolated splenic WT CD8+ T cells, TCR-activated and cultured with IL-2 using anti-Runx3 antibodies (Ab), anti-H3K4me1 Ab and non-immune serum (NIS) as control.
Overall design Two biological Runx3 and two NIS IP repeats from TCR-activated and IL-2 cultured splenic CD8+ T cells isolated by positive selection on anti-CD8 magnetic beads.
Contributor(s) Lotem J, Leshkowitz D, Groner Y
Citation(s) 24236182
Submission date Aug 22, 2013
Last update date May 15, 2019
Contact name Joseph Lotem
Phone 972-8-934-2342
Organization name Weizmann institute of science
Department Molecular genetics
Street address P.O.B 26
City Rehovot
ZIP/Postal code 76100
Country Israel
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (5)
GSM1214534 Runx3_IL2CD8+T_CHIP_Runx3_IP1
GSM1214535 Runx3_IL2CD8+T_CHIP_Runx3_IP2
GSM1214536 Runx3_IL2CD8+ T_CHIP_NIS1
This SubSeries is part of SuperSeries:
GSE50131 The transcription program of Runx3 in natural killer cells and CD8+ T cells
BioProject PRJNA216113
SRA SRP029169

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE50128_IL2_CD8_H3K4me1_peaks_to_small.bed.gz 159.3 Kb (ftp)(http) BED
GSE50128_IL2_CD8_Runx3_peaks_to_small.bed.gz 102.6 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap