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Series GSE50127 Query DataSets for GSE50127
Status Public on Nov 18, 2013
Title Genome-wide maps of Runx3 bound regions in splenic NK cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq was conducted using freshly isolated (resting) splenic WT NK cells with anti-Runx3 antibody (Ab), anti-H3K4me1 Ab and non-immune serum (NIS) as control.
Overall design Runx3 and H3K4me1 IP from splenic NK cells isolated by negative selection using NK cell isolation kit (R&D) followed by sorting of NKp46+ cells.
Contributor(s) Levanon D, Leshkowitz D, Groner Y
Citation(s) 24236182
Submission date Aug 22, 2013
Last update date May 15, 2019
Contact name Joseph Lotem
Phone 972-8-934-2342
Organization name Weizmann institute of science
Department Molecular genetics
Street address P.O.B 26
City Rehovot
ZIP/Postal code 76100
Country Israel
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (3)
GSM1214531 Runx3_NK_CHIP_Runx3_IP
GSM1214532 Runx3_NK_CHIP_NIS
GSM1214533 Runx3_NK_CHIP_H3K4me1_IP
This SubSeries is part of SuperSeries:
GSE50131 The transcription program of Runx3 in natural killer cells and CD8+ T cells
BioProject PRJNA216114
SRA SRP029168

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Supplementary file Size Download File type/resource
GSE50127_Resting_NK_H3K4me1_peaks_to_small.bed.gz 413.7 Kb (ftp)(http) BED
GSE50127_Resting_NK_Runx3_peaks_to_small.bed.gz 177.6 Kb (ftp)(http) BED
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Raw data are available in SRA
Processed data are available on Series record

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