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Series GSE49960 Query DataSets for GSE49960
Status Public on Dec 31, 2015
Title Transcriptome analysis of annotated coding genes and sORF under elevated CO2
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary There are seedling samples (high CO2 exposure of 0h, 2h, 6h, 12h, 1d, 3d, 7d, 14d) with duplicates in two chambers.
Overall design Arabidopsis WT (Col-0) seeds were plated on Murashige and Skoog plates and placed at 4°C in darkness for at least 2 d to synchronize germination. Plants were grown at 22C under long-day conditions (16-h light and 8-h dark) in two atmospheric CO2 environments: ambient (CO2: 390 μmol mol–1) or elevated (CO2: 780 μmol mol–1). Plants were grown in ambient atmospheric CO2 concentration and then exposed to elevated CO2 for 0 h, 2 h, 6 h, 12 h, 1 d, 3 d, 7 d and 14 d. 14-d-old seedlings were sampled at the same time. Treatments for elevated CO2 were carried out two times using two different chambers. Duplicate samples were collected from each chamber experiment. Totally, four biologically replicates were prepared in each condition.
Contributor(s) Higuchi-Takeuchi M, Shimizu M, Hanada K
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Submission date Aug 18, 2013
Last update date Jan 01, 2016
Contact name Kousuke Hanada
Organization name Kyushu Institute Technology
Department Department of Bioscience and Bioinformatics
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platforms (1)
GPL14937 Agilent-022830 RIKEN_AT_sORF0902
Samples (32)
GSM1210843 HighCO2_0H_rep1
GSM1210844 HighCO2_0H_rep2
GSM1210845 HighCO2_0H_rep3
BioProject PRJNA215689

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49960_RAW.tar 198.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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