|
| Status |
Public on Aug 13, 2013 |
| Title |
Copy number data from five primary human glioblastomas (frozen surgical resection) |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by genome tiling array
|
| Summary |
DNA hypomethylation could lead to activation of alternate promoters in GBM. We profiled DNA methylation and H3K4me3 genome-wide, and also performed expression and copy number analysis on the same samples
In this dataset, we include all array CGH copy number data obtained for five GBMs. We used estimated copy number to normalize sequencing-based methylation data.
|
| |
|
| Overall design |
Five total samples were analyzed.
|
| |
|
| Contributor(s) |
Nagarajan RP, Costello JF |
| Citation(s) |
24709822 |
| |
| Submission date |
Aug 12, 2013 |
| Last update date |
Nov 14, 2014 |
| Contact name |
RAMAN PAUL NAGARAJAN |
| Organization name |
UCSF
|
| Department |
NEUROSURGERY
|
| Lab |
COSTELLO
|
| Street address |
1450 3RD ST, ROOM HD200
|
| City |
SAN FRANCISCO |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9128 |
Agilent-014693 Human Genome CGH Microarray 244A (Probe name version) |
|
| Samples (5)
|
|
| This SubSeries is part of SuperSeries: |
| GSE49810 |
Expression and copy number data from five primary human glioblastomas |
|
| Relations |
| BioProject |
PRJNA214974 |
Less...
More...