NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE49715 Query DataSets for GSE49715
Status Public on Nov 16, 2013
Title Large conserved domains of low DNA methylation maintained by 5-hydroxymethycytosine and Dnmt3a [RNA-Seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To investigate the global transcriptome expression in Wild Type mouse hematopoietic stem cells, we performed high-throughput sequencing of Poly A+ RNA (RNA-Seq) from purified HSCs (SP-KSL-CD150+). With biological duplicates, more than 200 million reads in total were obtained.
 
Overall design Mouse hematopoietic stem cell mRNA profiles of wild type mice were generated by deep sequencing, in duplicate, using Illumina Hiseq 2000.
 
Contributor(s) Rodriguez B, Li W, Goodell M
Citation(s) 24270360
Submission date Aug 10, 2013
Last update date May 15, 2019
Contact name Margaret Goodell
Organization name Baylor College of Medicine
Street address One Baylor Plaza, N1030
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (4)
GSM1206270 wt_hsc_l1 RNA-Seq
GSM1206271 wt_hsc_l2 RNA-Seq
GSM1206272 wt_hsc_l3 RNA-Seq
This SubSeries is part of SuperSeries:
GSE49191 Large conserved domains of low DNA methylation maintained by 5-hydroxymethycytosine and Dnmt3a
Relations
BioProject PRJNA214818
SRA SRP028710

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49715_RAW.tar 2.7 Mb (http)(custom) TAR (of TSV)
GSE49715_deg.wt_hsc_vs_ko3a_hsc.txt.gz 3.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap