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Series GSE49396 Query DataSets for GSE49396
Status Public on Dec 01, 2013
Title Affymetrix SNP 6.0 data for analysis of esophageal adenocarcinoma samples
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Esophageal adenocarcinoma is characterized by complex chromosomal alterations. Tumors were evaluated to identify regions of recurrent copy gains and losses and to determine the prognositic significance of the degree of segmental aneuploidy as measured by SNP array.
Overall design 41 superficial esophageal adenocarcinomas were analyzed for copy number abnormalities. Matched normal lymph node tissue was used as a copy number reference.
Contributor(s) Davison J, LaFramboise W
Citation(s) 24454681
Submission date Jul 31, 2013
Last update date Nov 27, 2018
Contact name William Armand LaFramboise
Phone 412-623-6160
Organization name University of Pittsburgh
Department Pathology
Street address 5230 Centre Avenue
City Pittsburgh
State/province PA
ZIP/Postal code 15232
Country USA
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (82)
GSM1198865 59N
GSM1198866 59T
GSM1198867 163N
BioProject PRJNA213873

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49396_RAW.tar 3.3 Gb (http)(custom) TAR (of CEL, CHP)
Processed data provided as supplementary file

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