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Series GSE49149 Query DataSets for GSE49149
Status Public on Jul 08, 2014
Title Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma (PDAC)
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Determine methylation pattern in PDAC a genome-wide analysis was performed in a cohort of 167 PDAC and 29 adjacent pancreatic tissues samples using the Infinium 450k methylation arrays (Illumina).
Overall design 167 pancreatic tumors (PDAC) x 29 adjacent -non tumor samples.
Contributor(s) Nones K, Waddell N, Song S, Patch A, Kassahn K, Johns A, Wu J, Wood D, Bailey P, Miller D, Manning S, Christ A, Nourse C, Thomas M, Watson C, Pinese M, Cowley M, Scarpa A, Lawlor RT, Pearson JV, Biankin AV, Grimmond SM
Citation(s) 24500968, 26909576
Submission date Jul 23, 2013
Last update date Mar 22, 2019
Contact name Katia Nones
Phone +61 7 3845 3983
Organization name QIMR Berghofer MEdical Research Institute
Street address 300 Herston Road
City Brisbane
State/province QLD
ZIP/Postal code 4029
Country Australia
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (196)
GSM1194354 6042324127_R01C01
GSM1194355 6042324127_R02C01
GSM1194356 6042324127_R03C01
BioProject PRJNA213312

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49149_GSM1194354_to_GSM1194532_Beta_value_detection_pevalue_Methylation.txt.gz 365.7 Mb (ftp)(http) TXT
GSE49149_GSM1194354_to_GSM1194532_Signal_A_B_detection_pevalue_Methylation.txt.gz 400.8 Mb (ftp)(http) TXT
GSE49149_GSM1435224_to_GSM1435245_Signal_A_B_raw.txt.gz 23.9 Mb (ftp)(http) TXT
GSE49149_RAW.tar 1.7 Gb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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