GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE49004 Query DataSets for GSE49004
Status Public on Jan 01, 2017
Title Parallel SNP and CGH arrays of cytogenetic normal MDS patients and detection of alterations present in CD3+ T cells and bone marrow cells
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Fifty per cent of myelodysplastic syndromes has a normal karyotype. Genomic microarray allows the detection of alterations in this subset of cases. There to different types of genomic arrays: CGH and SNP array. In this study we want to compare both platforms and check the ability
Overall design Affymetrix SNP arrays were performed according to the manufacturer's directions on DNA extracted from bone marrow or peripheral blood and, in some cases, also lymphocytes CD3 isolated from peripheral blood samples.
Copy number analyses of Affymetrix 6.0 SNP arrays were performed for 22 MDS with normal karyotype. There are also 7 samples from lymphocytes CD3 isolated from peripheral blood, which were used as germ-line DNA (control).
Contributor(s) Mallo M, Solé F, Classen S, Royer-Pokora B
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 18, 2013
Last update date Nov 27, 2018
Contact name Mar Mallo
Organization name Josep Carreras Leukaemia Research Institute
Street address Ctra de Can Ruti, s/n, camí de les escoles. Edifici IMPPC
City Badalona
ZIP/Postal code 08916
Country Spain
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (29)
GSM1192020 Bone marrow MD44B
GSM1192021 CD3 lymphocytes from MD44T
GSM1192022 Bone marrow MD51B
Affiliated with GSE50897
BioProject PRJNA212571

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49004_RAW.tar 1.8 Gb (http)(custom) TAR (of CEL, CNCHP)
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap