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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 11, 2014 |
| Title |
Genes regulated in mouse liver by expressing ectopically hURI in hepatocytes |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
RNA-seq was performed using the RNA extracted from the bottom half of right lobe of mouse livers. Mice fall into two groups, mutant group which express ectopic hURI and their control littermates which do not express hURI. Two time points were considered in the study, 1-week-old mice, expressing hURI since 1 week (n =3, 4 for control and mutant, respectively) and 8-week-old mice expressing hURI since 8 week (n= 4, 3 for control and mutant, respectively), as hURI is expressed since conception.
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| Overall design |
Determination of differentially expressed transcripts over two time points (1 week and 8 weeks) in mouse livers expressing hURI (1 week and 8 weeks).
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| Contributor(s) |
Djouder N, Tummala KS, Graña O, González-Pisano D |
| Citation(s) |
25453901 |
| Submission date |
Jul 09, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Nabil Djouder |
| E-mail(s) |
ndjouder@cnio.es
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| Organization name |
CNIO
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| Lab |
Growth Factors, Nutrients and Cancer
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| Street address |
C/Melchor Fernandez Almagro, 3
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| City |
Madrid |
| ZIP/Postal code |
28029 |
| Country |
Spain |
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| Platforms (1) |
| GPL11002 |
Illumina Genome Analyzer IIx (Mus musculus) |
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| Samples (14)
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| GSM1182944 |
1 week Unconventional prefoldin RPB5 interactor overexpression, replicate 1 |
| GSM1182945 |
1 week Unconventional prefoldin RPB5 interactor overexpression, replicate 2 |
| GSM1182946 |
1 week Unconventional prefoldin RPB5 interactor overexpression, replicate 3 |
| GSM1182947 |
1 week Unconventional prefoldin RPB5 interactor overexpression, replicate 4 |
| GSM1182948 |
8 weeks control, replicate 1 |
| GSM1182949 |
8 weeks control, replicate 2 |
| GSM1182950 |
8 weeks control, replicate 3 |
| GSM1182951 |
8 weeks control, replicate 4 |
| GSM1182952 |
8 weeks Unconventional prefoldin RPB5 interactor overexpression, replicate 1 |
| GSM1182953 |
8 weeks Unconventional prefoldin RPB5 interactor overexpression, replicate 2 |
| GSM1182954 |
8 weeks Unconventional prefoldin RPB5 interactor overexpression, replicate 3 |
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| Relations |
| BioProject |
PRJNA210937 |
| SRA |
SRP026667 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE48654_RAW.tar |
14.1 Mb |
(http)(custom) |
TAR (of FPKM_TRACKING) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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