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Series GSE48543 Query DataSets for GSE48543
Status Public on Apr 17, 2014
Title Microarray analysis of colon tissue of DSS colitis STAP-2 KO mice
Organism Mus musculus
Experiment type Expression profiling by array
Summary To identify STAP-2 regulating genes modulated intestine inflammation, we conducted microarray analyses using colon tissue from pooled WT (n=3) or STAP-2-/- mice (n=3) treated with DSS for 3 days. Bioinformatic analyses revealed that STAP-2 deletion mediates insufficient immune and inflammatory reaction through altering a series of associated gene expression.
Overall design The DSS-treated colons derived from WT (n=3) and STAP-2 KO (n=3) mice were examined. Each strain was run in biological duplicate.
Contributor(s) Okuzaki D, Fujita N
Citation(s) 24733425
Submission date Jul 03, 2013
Last update date Nov 01, 2017
Contact name Daisuke Okuzaki
Phone +81-6-6879-4935
Organization name Osaka univ.
Department Immunology Frontier Research Center
Lab Human Immunology (Single Cell Genomics)
Street address Yamadaoka 3-1
City Suita
State/province Osaka
ZIP/Postal code 565-0871
Country Japan
Platforms (1)
GPL11202 Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Probe Name version)
Samples (4)
GSM1180581 WT, biological rep1
GSM1180582 WT, biological rep2
GSM1180583 STAP-2-/-, biological rep1
BioProject PRJNA210513

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48543_RAW.tar 8.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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