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Series GSE47948 Query DataSets for GSE47948
Status Public on Jun 15, 2013
Title RNA-seq analysis of global RNA levels at 4 stages of directed cardiac differentiation of mouse embryonic stem cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We interrogated the transcriptome using RNA-seq at several stages of an mouse embryonic stem cell to cardiomyocyte directed differentiation protocol. These four stages represent timepoints when differentiating cultures are enriched for embryonic stem cells (ESC), mesodermal cells (MES), cardiac precursors (CP), or cardiomyocytes (CM) respectively. This study revealed many dynamic patterns of mRNAs and long non-coding RNAs (lncRNAs) and identified groups of genes with similar expression patterns during differentiation.
Overall design RNA-seq analysis of global RNA levels at 4 stages of directed cardiac differentiation of mouse embryonic stem cells. Each stage in biological duplicates
Contributor(s) Alexander J, Wamstad J
Citation(s) 22981692
Submission date Jun 14, 2013
Last update date May 15, 2019
Contact name Laurie A Boyer
Phone 617 324-3335
Organization name Massachusetts Institute of Technology
Department Biology
Lab Boyer
Street address 77 Massachusetts Avenue
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (8)
GSM1163076 RNA_ESC_Rep_1_JW-H9B
GSM1163077 RNA_ESC_Rep_2_JW-H10B
GSM1163078 RNA_MES_Rep_1_JW-H3B
This SubSeries is part of SuperSeries:
GSE47950 Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage
BioProject PRJNA208437
SRA SRP026035

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE47948_RAW.tar 948.7 Mb (http)(custom) TAR (of BW)
GSE47948_RNAseq_RPKM.txt.gz 366.2 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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