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Series GSE46969 Query DataSets for GSE46969
Status Public on Nov 04, 2013
Title Affymetrix SNP array data for 29 MCL cases
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary DNA from four 29 cases, 38 tumor samples (23 PB, 12 LN, 1 Tonsil, 1 colonic biopsy, 1 spleen) and 29 normal DNA from the same patients were analyzed with Affymetrix SNP 6.0 platform for copy number alterations study.
Affymetrix SNP arrays were performed according to the manufacturer's directions on DNA extracted from blood samples, lymph nodes and other tissues like spleen, tonsil and colonic biopsy
Overall design Copy number analysis of Affymetrix SNP 6.0 arrays was performed for 29 MCL cases samples and their respective matched non-tumor DNA, which were used as references for copy number inference.
Contributor(s) Beà S, Campo E
Citation(s) 24145436, 31676012
Submission date May 15, 2013
Last update date Nov 12, 2019
Contact name Sílvia Beà
Phone +34 93 2275536
Fax +34 93 2275717
Organization name Hospital Clinic
Department HematoPathology
Lab Molecular Pathology
Street address Rossello, 153
City Barcelona
State/province Barcelona
ZIP/Postal code 08036
Country Spain
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (67)
GSM1142034 Mantle cell lymphoma M001 Peripheral Blood
GSM1142035 Mantle cell lymphoma M001 Lymph Node
GSM1142036 Mantle cell lymphoma M001 Normal
BioProject PRJNA203212

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46969_RAW.tar 4.2 Gb (http)(custom) TAR (of CEL, CNCHP)
Processed data included within Sample table
Processed data provided as supplementary file

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