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Series GSE46916 Query DataSets for GSE46916
Status Public on Dec 01, 2015
Title RNA-seq of Danio rerio and Mus musculus skin for three different age groups
Organisms Danio rerio; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Background: Comparison of temporal gene expression profiles.
The RNA-seq data comprises 3 age groups: 2, 15 and 30 months for mouse skin; 5, 24 and 42 months for zebrafish skin.
Illumina 50bp single-stranded single-read RNA sequencing

Jena Centre for Systems Biology of Ageing - JenAge (
Overall design 15 samples for mouse: 5 biological replicates for 2 months, 6 biological replicates for 15 months and 4 biological replicates for 30 months; 20 samples for zebrafish: 9 biological replicates for 5 months, 6 biological replicates for 24 months and 5 biological replicates for 42 months
Contributor(s) Frahm C, Guenther M, Witte O, Hartmann N, Englert C, Priebe S, Groth M, Platzer M
Citation(s) 26620638
Submission date May 14, 2013
Last update date May 15, 2019
Contact name JenAge Project
Organization name Leibniz Institute for Age Research - Fritz Lipmann Institute
Street address Beutenbergstr. 11
City Jena
ZIP/Postal code D-07745
Country Germany
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL15583 Illumina Genome Analyzer IIx (Danio rerio)
Samples (35)
GSM1141084 OE1642 mm skin 2months rep1
GSM1141085 OE1643 mm skin 2months rep2
GSM1141086 OE1644 mm skin 2months rep3
BioProject PRJNA203029
SRA SRP022612

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46916_danrer_20samples_RPKM.txt.gz 722.5 Kb (ftp)(http) TXT
GSE46916_danrer_20samples_counts.txt.gz 611.7 Kb (ftp)(http) TXT
GSE46916_mm_15samples_RPKM.txt.gz 813.8 Kb (ftp)(http) TXT
GSE46916_mm_15samples_counts.txt.gz 749.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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