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Series GSE46878 Query DataSets for GSE46878
Status Public on Jan 06, 2014
Title RNA methylation destabilizes developmental regulators in murine embryonic stem cells (m6A)
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary m6A-seq of mouse embryonic stem cell wildtype or mutant depleted of Mettl3 or Mettl14
Overall design m6A-mRNA library for mouse embryonic stem cell each having one biological replicate were generated using HiSeq2000 v3 flowcell (Illumina) and sequenced for 100 bases with separate 7 base indexing read in a single lane.
Contributor(s) Wang Y, Li Y, Zhang Z, Zhao JC
Citation(s) 24394384
Submission date May 13, 2013
Last update date May 15, 2019
Contact name Yue Li
Organization name Massachusetts Institute of Technology
Street address 32 Vassar Street, 32-D528
City Cambridge
State/province Massachusetts
ZIP/Postal code 02139
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (12)
GSM1139738 Scramble control 1
GSM1139739 Mettl14 knockdown 1
GSM1139740 Mettl3 knockdown 1
This SubSeries is part of SuperSeries:
GSE46880 RNA methylation destabilizes developmental regulators in murine embryonic stem cells
BioProject PRJNA202908
SRA SRP022565

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46878_YW11_m6A_IP_mettl14KD_vs_YW10_m6A_IP_Scr.txt.gz 430.1 Kb (ftp)(http) TXT
GSE46878_YW12_m6A_IP_mettl3KD_vs_YW10_m6A_IP_Scr.txt.gz 431.8 Kb (ftp)(http) TXT
GSE46878_YW5_m6A_IP_mettl14KD_vs_YW4_m6A_IP_Scr.txt.gz 566.6 Kb (ftp)(http) TXT
GSE46878_YW6_m6A_IP_mettl3KD_vs_YW4_m6A_IP_Scr.txt.gz 541.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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