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Series GSE46213 Query DataSets for GSE46213
Status Public on Sep 09, 2013
Title Role of RelA:CBP/p300 interaction on RelA-activated genes
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary A structure-function study of NF-kB subunit RelA and coactivator CBP/p300 interaction reveals the critical role of CBP/p300 in recruitment of RelA to its target promoter site.
Overall design mRNA profiles of unstimulated or stimulated with TNFa rela-/- MEF reconstituted with RelA wild type or mutants were generated by deep sequencing, in duplicate
Contributor(s) Mukherjee SP, Birnbaum HA, Ghosh G, Hoffmann A
Citation(s) 24019758
Submission date Apr 19, 2013
Last update date May 15, 2019
Contact name Harry Aaron Birnbaum
Organization name UCSD Chem and Biochem
Street address 4406 Dawes Street
City San Diego
State/province California
ZIP/Postal code 92109
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (18)
GSM1126447 WT_0hr_rep1
GSM1126448 WT_1hr_rep1
GSM1126449 WT_2hr_rep1
BioProject PRJNA198089
SRA SRP021190

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46213_RAW.tar 79.3 Mb (http)(custom) TAR (of FPKM_TRACKING, GTF)
GSE46213_genes.fpkm_tracking.gz 2.4 Mb (ftp)(http) FPKM_TRACKING
GSE46213_isoforms.fpkm_tracking.gz 5.3 Mb (ftp)(http) FPKM_TRACKING
GSE46213_merged.gtf.gz 7.3 Mb (ftp)(http) GTF
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Processed data are available on Series record
Processed data provided as supplementary file
Raw data are available in SRA

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