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Series GSE46213 Query DataSets for GSE46213
Status Public on Sep 09, 2013
Title Role of RelA:CBP/p300 interaction on RelA-activated genes
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary A structure-function study of NF-kB subunit RelA and coactivator CBP/p300 interaction reveals the critical role of CBP/p300 in recruitment of RelA to its target promoter site.
 
Overall design mRNA profiles of unstimulated or stimulated with TNFa rela-/- MEF reconstituted with RelA wild type or mutants were generated by deep sequencing, in duplicate
 
Contributor(s) Mukherjee SP, Birnbaum HA, Ghosh G, Hoffmann A
Citation(s) 24019758
Submission date Apr 19, 2013
Last update date May 15, 2019
Contact name Harry Aaron Birnbaum
E-mail(s) birnbaumharry@gmail.com
Organization name UCSD Chem and Biochem
Street address 4406 Dawes Street
City San Diego
State/province California
ZIP/Postal code 92109
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (18)
GSM1126447 WT_0hr_rep1
GSM1126448 WT_1hr_rep1
GSM1126449 WT_2hr_rep1
Relations
BioProject PRJNA198089
SRA SRP021190

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46213_RAW.tar 79.3 Mb (http)(custom) TAR (of FPKM_TRACKING, GTF)
GSE46213_genes.fpkm_tracking.gz 2.4 Mb (ftp)(http) FPKM_TRACKING
GSE46213_isoforms.fpkm_tracking.gz 5.3 Mb (ftp)(http) FPKM_TRACKING
GSE46213_merged.gtf.gz 7.3 Mb (ftp)(http) GTF
SRA Run SelectorHelp
Processed data are available on Series record
Processed data provided as supplementary file
Raw data are available in SRA

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