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Series GSE46207 Query DataSets for GSE46207
Status Public on May 18, 2013
Title Impairment of Muscle Regeneration in Muscleblind-like 3 Isoform Knockout Mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We have performed an RNA-seq experiment to identify expression and alternative splicing differences between WT and Mbnl3 isoform knockout mice E15 forelimbs. We have also identified and characterized transcriptome wide Mbnl3-binding sites in C2C12 cells and E15 forelimbs.
Overall design 6 total samples were analyzed: E15 forelimbs from 3 WT and 3 MBNL3 ΔE2/ΔE2 female mice (15dpc). For HITS-CLIP, 3 samples each of C2C12 cells, WT E15 forelimbs and Mbnl3 ?E2 forelimbs were analyzed for Mbnl3 binding site analysis.
Contributor(s) Ranjan B, Chaolin Z
Citation(s) 23660517
Submission date Apr 18, 2013
Last update date May 15, 2019
Contact name Ranjan Batra
Phone 352-222-9209
Organization name University of California San Diego
Department Cellular and Molecular Medicine
Lab Yeo Lab
Street address 2880 Torrey Pines Scenic Drive
City La Jolla
State/province California
ZIP/Postal code 92037
Country USA
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (15)
GSM1126329 WT, biological rep 1
GSM1126330 WT, biological rep 2
GSM1126331 WT, biological rep 3
BioProject PRJNA198191
SRA SRP021195

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Supplementary file Size Download File type/resource
GSE46207_Mbnl3_37_C2C12_combined.bed.gz 12.0 Mb (ftp)(http) BED
GSE46207_RAW.tar 484.4 Mb (http)(custom) TAR (of BED, BEDGRAPH)
GSE46207_RNA-seq_Mbnl3_E15_WT_vs_KO.txt.gz 11.6 Kb (ftp)(http) TXT
GSE46207_Table_1_HITS_CLIP_Summary.xls.gz 718.3 Kb (ftp)(http) XLS
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Raw data are available in SRA
Processed data provided as supplementary file

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