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Series GSE45358 Query DataSets for GSE45358
Status Public on Jul 01, 2013
Title Gene expression analysis of murine peritoneal macrophages deficient for SAMHD1 and IFNAR
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To investigate the contribution of type-1 IFN signalling to the upregulation of IFN- stimulated genes in SAMHD1-deficient cells, we performed global gene expression analysis of SAMHD1-deficient IFNAR-/- macrophages.
 
Overall design Peritoneal macrophages from ten SAMHD1-deficient IFNAR-/- and six SAMHD1-deficient controls were FACS sorted. RNA was subjected to next generation mRNA sequencing.
 
Contributor(s) Behrendt R, Schumann T, Dahl A, Alexopoulou D
Citation(s) 23972988
Submission date Mar 20, 2013
Last update date May 15, 2019
Contact name Tina Schumann
E-mail(s) Tina.Schumann@tu-dresden.de
Organization name Institute of Immunology
Department Medical Faculty "Carl Gustav Carus"
Street address Fetscherstra├če 74
City Dresden
ZIP/Postal code 01307
Country Germany
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (16)
GSM1103002 macrophages double-KOs #1
GSM1103003 macrophages double-KOs #2
GSM1103004 macrophages double-KOs #3
Relations
BioProject PRJNA193592
SRA SRP019915

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE45358_p138.exon.counts.txt.gz 601.3 Kb (ftp)(http) TXT
GSE45358_p138.junction.counts.txt.gz 423.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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