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Series GSE44350 Query DataSets for GSE44350
Status Public on May 06, 2013
Title Genome-scale DNA methylation maps of mouse chromaffin cells with or without Sdhb knock-out.
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary We report the analysis of DNA methylation in mouse chromaffin cell lines using reduced representation bisulfite sequencing (RRBS). We compared DNA methylation profiles of cell lines with or without a knock-out of Sdhb gene, showing that Sdhb disruption results in a hypermethylator phenotype.
Overall design Reduced representation bisulfite sequencing of 4 mouse chromaffin cell samples (2 Sdhb wild-type and 2 Sdhb knock-out).
Contributor(s) Letouzé E, Gimenez-Roqueplo A, Favier J
Citation(s) 23707781
Submission date Feb 15, 2013
Last update date May 15, 2019
Contact name Eric Letouzé
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (4)
GSM1083649 CC_WT1
GSM1083650 CC_WT2
GSM1083651 CC_6
This SubSeries is part of SuperSeries:
GSE43298 Genome-scale methylome profiling of human pheochromocytomas and paragangliomas (Illumina methylation beadchips) and mouse chromaffin cells (RRBS)
SRA SRP018700
BioProject PRJNA189668

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Supplementary file Size Download File type/resource
GSE44350_RAW.tar 80.9 Mb (http)(custom) TAR (of BED)
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Raw data are available in SRA
Processed data provided as supplementary file

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