GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE44304 Query DataSets for GSE44304
Status Public on Apr 07, 2013
Title Genome-wide maps of DNA cytosine methylation state in during normal differentiation commitment in hematopoietic stem cells (HSC) and in Special AT-rich sequence-binding protein1 (Satb1) - deficient HSC
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary Our data show Satb1 deficiency leads to alterations in DNA cytosine methylation and a commitment-primed epigenetic state in HSCs.
Overall design Examination of DNA cytosine methylation in wild type HSC and differentiation-committed progenitors as well as in wild type HSC and HSC lacking Satb1 (n=2 each).
Contributor(s) Steidl U, Will B, Bartholdy B, Garrett-Bakelman F, Melnick A
Citation(s) 23563689
Submission date Feb 13, 2013
Last update date May 15, 2019
Contact name Boris Bartholdy
Organization name Albert Einstein College of Medicine
Department Cell Biology
Street address 1300 Morris Park Ave
City Bronx
State/province NY
ZIP/Postal code 10461
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (6)
GSM1082865 HSC WT rep1
GSM1082866 HSC WT rep2
GSM1082867 MPP WT rep1
BioProject PRJNA189409
SRA SRP018638

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE44304_RAW.tar 103.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap