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Series GSE44092 Query DataSets for GSE44092
Status Public on Feb 14, 2013
Title Bisulfite-Seq profiling of undifferentiated ESCs, and in vitro derived primordial germ cells (iPGCs)
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary We report that in vitro derived PGCs undergo genome-wide DNA demethylation and that this demethylation does not require Tet1/Tet2
Overall design Examination of methylation in ESCs, iPGCs, and Tet2-/- iPGCs depleted of Tet1 by shRNA lentiviruses
Contributor(s) Vincent JJ, Clark AT
Citation(s) 23415914
Submission date Feb 05, 2013
Last update date May 15, 2019
Contact name John Vincent
Organization name UCLA
Department MCDB
Street address 621 Charles E Young Dr. S
City Los Angeles
ZIP/Postal code 90095
Country USA
Platforms (2)
GPL9250 Illumina Genome Analyzer II (Mus musculus)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (12)
GSM1078329 mBS47
GSM1078330 mBS44
GSM1078331 mBS49
BioProject PRJNA189191
SRA SRP018523

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE44092_RAW.tar 24.2 Gb (http)(custom) TAR (of TXT)
GSE44092_mouse_mm9_chr_name_id.txt.gz 151 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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