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Series GSE43229 Query DataSets for GSE43229
Status Public on Dec 01, 2013
Title Combinatorial role of Jmjd2b and Jmjd2c in mESCs identity
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Genome-wide occupancy of biotinylated Jmjd2b, Jmjd2c from mESCs, as well as occupancy of selected factors and histone marks from wild-type mESCs, Anti-GFP KD, Jmj2b KD and Jmjd2c KD mESCs genome
Overall design To identify genome-wide binding target sites of Jmjd2b and Jmjd2c in the mESCs genome, and genome-wide binding sites for selected factors and histone marks from Anti-GFP KD, Jmjd2b KD and Jmjd2c KD mESCs
Contributor(s) Das PP, Shao Z, Orkin SH
Citation(s) 24361252, 31005419
Submission date Jan 02, 2013
Last update date May 15, 2019
Contact name Zhen Shao
Organization name Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences
Lab Zhen Shao
Street address 320 Yueyang Road
City Shanghai
ZIP/Postal code 230031
Country China
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL14759 Helicos HeliScope (Mus musculus)
Samples (44)
GSM1058995 mESC_BioJmjd2b_solexa
GSM1058996 mESC_BioJmjd2c_solexa
GSM1058997 mESC_BirA_solexa
This SubSeries is part of SuperSeries:
GSE43231 Combinatorial role of Jmjd2b and Jmjd2c in mESC identity
BioProject PRJNA185048
SRA SRP017752

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43229_RAW.tar 11.4 Gb (http)(custom) TAR (of BED, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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