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Series GSE42861 Query DataSets for GSE42861
Status Public on Jan 21, 2013
Title Differential DNA methylation in Rheumatoid arthritis
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome-wide DNA methylation level was studied to determine whether Rheumatoid arthritis patients (cases) has methylation differences comparing to normal controls in peripheral blood leukocytes (PBLs).
We used Illumina HumanMethylation450 BeadChip array to determine the genome-wide DNA methylation difference in PBLs from Rheumatoid arthritis patients (cases) and normal controls
Overall design Bisulphite converted DNA from the Rheumatoid arthritis patients (cases) and normal controls were hybridized to the Illumina Illumina HumanMethylation450 BeadChip arrays
Contributor(s) Liu Y, Feinberg AP
Citation(s) 23334450, 29921915
Submission date Dec 12, 2012
Last update date Jul 06, 2022
Contact name Yun Liu
Organization name Fudan University
Street address 130 Dong An Road
City Shanghai
ZIP/Postal code 200032
Country China
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (689)
GSM1051525 Patient genomic DNA from sample 1
GSM1051526 Patient genomic DNA from sample 2
GSM1051527 Patient genomic DNA from sample 3
Reanalyzed by GSE207605
BioProject PRJNA183708

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42861_RAW.tar 5.7 Gb (http)(custom) TAR (of IDAT)
GSE42861_Readme.txt 128 b (ftp)(http) TXT
GSE42861_methylation_signal_matrix.txt.gz 2.6 Gb (ftp)(http) TXT
GSE42861_methylation_signal_matrix_SUBSETS.tar.gz 2.6 Gb (ftp)(http) TAR
GSE42861_non-methylated_signal_matrix.txt.gz 2.6 Gb (ftp)(http) TXT
GSE42861_non-methylated_signal_matrix_SUBSETS.tar.gz 2.6 Gb (ftp)(http) TAR
GSE42861_processed_methylation_matrix.txt.gz 2.5 Gb (ftp)(http) TXT
GSE42861_processed_methylation_matrix_SUBSETS.tar.gz 2.6 Gb (ftp)(http) TAR
Processed data included within Sample table
Processed data are available on Series record

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