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| Status |
Public on Jan 01, 2014 |
| Title |
Transcriptome analysis of Azospirillum lipoferum 4B during its interaction with rice roots |
| Organism |
Azospirillum lipoferum 4B |
| Experiment type |
Expression profiling by array
|
| Summary |
Investigation of whole genome gene expression level changes in a Azospirillum lipoferum 4B associated to artificial roots, Oryza sativa japonica cv. Cigalon roots and Oryza sativa japonica cv. Nipponbare roots, compared to the strain grown in liquid culture.
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| Overall design |
For each of the four condition, two replicates were analysed on an A. lipoferum 4B whole genome expression array designed by Roche Nimblegen, Inc. (Madison, WI, USA), based on the genome sequence (Wisniewski-Dyé et al. 2011), as follows: two replicates of 5 probes (length, 60 nucleotides) per gene, covering 6,242 genes and using a total of 62,178 probes.
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| Contributor(s) |
Drogue B, Sanguin H, Borland S, Prigent-Combaret C, Wisniewski-Dyé F |
| Citation(s) |
24283406 |
| |
| Submission date |
Nov 21, 2012 |
| Last update date |
Apr 02, 2014 |
| Contact name |
Benoît DROGUE |
| Organization name |
Université de Lyon
|
| Department |
Université Lyon 1
|
| Lab |
CNRS UMR5557 Ecologie Microbienne
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| Street address |
Boulevard du 11 novembre
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| City |
Villeurbanne |
| State/province |
Rhône-Alpes |
| ZIP/Postal code |
69100 |
| Country |
France |
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| Platforms (1) |
| GPL16313 |
Nimblegen_Azospirillum lipoferum 4B_6.2 K |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA185440 |
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