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Series GSE42321 Query DataSets for GSE42321
Status Public on Jan 24, 2013
Title Temporal mapping of C/EBPα and –β binding during liver regeneration
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Temporal mapping of C/EBPα and –β binding during liver regeneration reveals dynamic occupancy and specific regulatory codes for homeostatic and cell cycle gene batteries.
Overall design Timeseries ChIP-seq of transcription factors C/EBPα and –β, and Pol II in time points 0, 3, 8, 16, 24, 36, 48, 168 hours after partial hepatectomy. Additionally, an IgG mock to 0h was sequenced, as well as the transcription factor Egr1.
Contributor(s) Jakobsen JS, Waage JE, Rapin N, Bisgaard HC, Larsen FS, Porse BT
Citation(s) 23403033
Submission date Nov 15, 2012
Last update date May 15, 2019
Contact name Johannes Eichler Waage
Phone 004521232722
Organization name University Of Copenhagen
Department Biotech Research and Innovation Center
Lab Porse / Sandelin
Street address Ole Maaløesvej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (26)
GSM1037657 C/EBPalpha 0h
GSM1037658 C/EBPalpha 3h
GSM1037659 C/EBPalpha 8h
BioProject PRJNA181023
SRA SRP017193

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42321_RAW.tar 10.0 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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