|
| Status |
Public on Jun 08, 2013 |
| Title |
COHCAP HCT116 Mutant Comparison [methylation] |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
|
| Summary |
Genome-wide expression and methylation differences are compared for a normal HCT116 cell line and a derived mutant with altered DNA methylation patterns.
|
| |
|
| Overall design |
The data compares the effect of a gene mutation on genome-wide expression (and methylation). This data is being published as a technical test of utility for a novel integrative genomic algorithm (COHCAP)
Keywords: parental, mutant
|
| |
|
| Contributor(s) |
Yu H, Lee H, Jove R, Warden C |
| Citation(s) |
23598999 |
| |
| Submission date |
Nov 15, 2012 |
| Last update date |
Mar 27, 2019 |
| Contact name |
Charles David Warden |
| Organization name |
City of Hope
|
| Department |
Department of Molecular and Cellular Biology
|
| Street address |
1500 East Duarte Rd
|
| City |
Duarte |
| State/province |
CA |
| ZIP/Postal code |
91010 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
|
| Samples (6)
|
|
| This SubSeries is part of SuperSeries: |
| GSE42310 |
COHCAP: City of Hope CpG Island Analysis Pipeline |
|
| Relations |
| BioProject |
PRJNA181149 |
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