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Series GSE42308 Query DataSets for GSE42308
Status Public on Jun 08, 2013
Title COHCAP HCT116 Mutant Comparison [methylation]
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome-wide expression and methylation differences are compared for a normal HCT116 cell line and a derived mutant with altered DNA methylation patterns.
Overall design The data compares the effect of a gene mutation on genome-wide expression (and methylation). This data is being published as a technical test of utility for a novel integrative genomic algorithm (COHCAP)
Keywords: parental, mutant
Contributor(s) Yu H, Lee H, Jove R, Warden C
Citation(s) 23598999
Submission date Nov 15, 2012
Last update date Mar 27, 2019
Contact name Charles David Warden
Organization name City of Hope
Department Department of Molecular and Cellular Biology
Street address 1500 East Duarte Rd
City Duarte
State/province CA
ZIP/Postal code 91010
Country USA
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (6)
GSM1038308 parental1 [methylation]
GSM1038309 parental2 [methylation]
GSM1038310 parental3 [methylation]
This SubSeries is part of SuperSeries:
GSE42310 COHCAP: City of Hope CpG Island Analysis Pipeline
BioProject PRJNA181149

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42308_HY_450k_signal_intensity.txt.gz 14.6 Mb (ftp)(http) TXT
GSE42308_RAW.tar 231.4 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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