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Series GSE42249 Query DataSets for GSE42249
Status Public on Nov 01, 2013
Title Genome-wide localization of NF-E2 p45 in mouse primary megakaryocytes.
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq assay was performed with anti-p45 antibody using in vitro cultured primary megakaryocytes to identify direct p45 target genes in megakaryocytes. This analysis revealed genes that regulate platelet function, which were not known previously to be p45-regulated.
Overall design ChIP was performed using a day-3 primary culture of megakaryocytes from E13.5 fetal livers of wild-type mice with an anti-p45 antibody.
Contributor(s) Fujita R, Fujii S, Sarai A, Aburatani H, Bresnick EH, Yamamoto M, Motohashi H
Citation(s) 23648484
Submission date Nov 13, 2012
Last update date May 15, 2019
Contact name Hozumi Motohashi
Phone 81-22-717-8087
Fax 81-22-717-8090
Organization name Tohoku University Graduate School of Medicine
Department Center for Radioisotope Science
Street address 2-1 Seiryo-machi, Aoba-ku
City Sendai
State/province Miyagi
ZIP/Postal code 980-8575
Country Japan
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (2)
GSM1036273 p45 ChIP-seq
GSM1036274 input
BioProject PRJNA179441
SRA SRP017165

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42249_RAW.tar 30.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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