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Series GSE42208 Query DataSets for GSE42208
Status Public on Nov 20, 2013
Title Hdac6 regulates Tip60-p400 function in stem cells (gene expression)
Organism Mus musculus
Experiment type Expression profiling by array
Summary To identify the functional role of Hdac6 in embryonic stem cells, we examined gene expression changes in mouse ES cells upon Tip60, Hdac6 and double knockdown.
Overall design Two biological replicates each for control (GFP), Tip60, Hdac6 and double KD in E14 mouse ESCs. Lentiviral-based shRNA was used and gene expression changes were determined 3 days after KD. The global gene expression profiles of Tip60, Hdac6 and double KD were compared to control KD cells.
Contributor(s) Chen PB, Hung J, Hickman TL, Coles AH, Carey JF, Weng Z, Chu F, Fazzio TG
Citation(s) 24302573
Submission date Nov 09, 2012
Last update date Jan 19, 2018
Contact name Benson Chen
Organization name UC San Diego
Department Cellular and Molecular Medicine
Lab Bing Ren
Street address 9500 Gilman Dr. CMM East, Room 2071
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
Platforms (1)
GPL10333 Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Feature Number version)
Samples (8)
GSM1035406 EGFP KD,replicate A
GSM1035407 EGFP KD,replicate B
GSM1035408 Tip60 KD,replicate A
This SubSeries is part of SuperSeries:
GSE42329 Hdac6 regulates Tip60-p400 function in stem cells
BioProject PRJNA181060

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42208_RAW.tar 78.4 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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