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Series GSE42173 Query DataSets for GSE42173
Status Public on Nov 21, 2012
Title Expression profile of colon crypts from WT and GMCSF-/- mice with or without DSS treatment
Organism Mus musculus
Experiment type Expression profiling by array
Summary To discover possible molecular mechanisms mediated by GM-CSF that may be involved in regeneration of the colon epithelium after DSS-induced injury we performed whole-genome wide mRNA microchip analysis of isolated crypt epithelial cells from unchallenged and DSS-challenged WT and GM-CSF-/- mice.
Overall design Total RNA was prepared from isolated crypts obtained from colons of GM-CSF deficient mice and WT littermates treated or untreated with 1.5%DSS for 6 days. Three biological replicates were performed for each experimental condition.
Contributor(s) Egea L, McAllister CS, Lakhdari O, Minev I, Shenouda S, Kagnoff MF
Citation(s) 23325885
Submission date Nov 08, 2012
Last update date Jan 19, 2018
Contact name Laia Egea
Organization name UCSD
Department Medicine
Lab Laboratory of Mucosal Immunology
Street address 9500 Gilman Dr
City La Jolla
State/province CA
ZIP/Postal code 92093-0623
Country USA
Platforms (1)
GPL10333 Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Feature Number version)
Samples (12)
GSM1034111 wt water 6 days 78_1
GSM1034112 gmcsf ko water 6 days 78_2
GSM1034113 wt dss 6 days 78_3
BioProject PRJNA179229

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42173_RAW.tar 115.6 Mb (http)(custom) TAR (of TXT)
GSE42173_multi_loess.txt.gz 1.4 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
Processed data are available on Series record

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