|
| Status |
Public on Dec 03, 2012 |
| Title |
ChIP-seq analysis of CTCF binding sites in lymphocyte subsets [DP thymocytes] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
In this study, we compare the binding pattern of CTCF at the T cell receptor alpha locus in different subsets of developing lymphocytes
|
| |
|
| Overall design |
For the ChIP-seq, input and immunoprecipitated DNA was given to The Scripps DNA Array Facility, where it was prepared for massively parallel sequencing on Illumina Genome Analyzer IIx.
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| |
|
| Contributor(s) |
Torkamani A, Feeney AJ, Verma-Gaur J |
| Citation(s) |
23169622 |
| Submission date |
Oct 22, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Ali Torkamani |
| E-mail(s) |
atorkama@scripps.edu
|
| Organization name |
TSRI
|
| Street address |
3344 North Torrey Pines Court Suite 300
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL11002 |
Illumina Genome Analyzer IIx (Mus musculus) |
|
| Samples (2) |
|
| This SubSeries is part of SuperSeries: |
| GSE41743 |
ChIP-seq analysis of CTCF binding sites in lymphocyte subsets |
|
| Relations |
| BioProject |
PRJNA178099 |
| SRA |
SRP016585 |
