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Series GSE41293 Query DataSets for GSE41293
Status Public on Nov 28, 2012
Title Mouse Model of Clear Cell Sarcoma
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Profile gene expression from tumors that develop in mice bearing conditional activation of EWS-ATF1, compared to control mouse tissues from the chest wall as well as tumor samples from mouse models of synovial sarcoma and osteosarcoma achieved by conditional disruption of Rb1 and p53
Overall design 13 clear cell sarcomas (5 started with Rosa26CreER, 4 with TATCre, 2 with Prx1CreERT2, and 2 with Bmi1IRESCreERT2), 7 osteosarcomas, 6 synovial sarcomas, 6 control samples
Contributor(s) Capecchi MR
Citation(s) 23410975
Submission date Oct 02, 2012
Last update date May 15, 2019
Contact name Brett Milash
Organization name University of Utah
Department Center for High Performance Computing
Street address 155 S. 1452 E. Room 414
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (32)
GSM1013699 Prx1CreRb1p53N28thigh
GSM1013700 Prx1CreRb1p53N38
GSM1013701 Prx1CreRb1p53N42
BioProject PRJNA176464
SRA SRP015977

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41293_README_human_sarcoma_data.txt 224 b (ftp)(http) TXT
GSE41293_human_sarcoma_log2_ratios.txt.gz 1.5 Mb (ftp)(http) TXT
GSE41293_mouse_sarcoma_rpkm_values.txt.gz 2.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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