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Series GSE40975 Query DataSets for GSE40975
Status Public on Sep 12, 2013
Title Genome-wide measurement of Nkx-6.1 in mouse islets.
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We perfomed a ChIP-seq experiment to identify the location of binding sites for the transcription factor Nkx6-1 in mouse islets.
Overall design A single set of islets were extracted from a mouse and Nkx-6.1 and input ChIP-Seq libraries were prepared and sequenced.
Contributor(s) Taylor B, Sander M, Schug J
Citation(s) 24035389
Submission date Sep 18, 2012
Last update date May 15, 2019
Contact name Jonathan Schug
Phone 215 898 0773
Organization name University of Pennsylvania
Department School of Medicine
Lab Next-Generation Sequencing Core
Street address 12-156 Smilow Ctr Trans Research
City Philadelphia
State/province Pennsylvania
ZIP/Postal code 19104-5160
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (2)
GSM1006208 Nkx61 islet normal 1
GSM1006209 input islet normal 1
BioProject PRJNA175514
SRA SRP015805

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40975_RAW.tar 470.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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