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Series GSE40190 Query DataSets for GSE40190
Status Public on Aug 05, 2015
Title High-throughput sequencing of mouse liver transcriptome.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Circadian profile of polyA RNA by RNA-Seq, collected from mouse liver at CT23, CT29, CT35, CT41, CT47, CT53, CT59, CT65. RNA from three livers pooled per time point.
Overall design 8 wildtype samples with no replicates.
Contributor(s) Lahens NF, Hughes ME, Hong H, Grant GR, Gregory BD, Takahashi JS, Hogenesch JB
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Submission date Aug 17, 2012
Last update date May 15, 2019
Contact name Nicholas Lahens
Organization name University of Pennsylvania
Department ITMAT
Street address Smilow Center for Translational Research 10-110 3400 Civic Center Blvd, Bldg 421
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (8)
GSM988108 CT23
GSM988109 CT29
GSM988110 CT35
BioProject PRJNA173065
SRA SRP014903

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40190_RAW.tar 543.8 Mb (http)(custom) TAR (of BED, BEDGRAPH, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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