|
| Status |
Public on Apr 30, 2014 |
| Title |
High-throughput sequencing of Brf1 (Zfp36l1) and Brf2 (Zfp36l2) targets |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We conducted RNA/RNA binding protein immunoprecipitation (RIP) followed by high throughput sequencing to identify mRNA targets of Brf1 (Zfp36l1) and Brf2 (Zfp36l2) in mouse embryonic stem cells. We collected over 190 million sequencing reads and identified many highly enriched protein coding mRNAs. Gene ontology analysis of enriched genes reveals that transcription factors and intercellular signaling proteins account for a large fraction of the targets, many of which are important for pluripotency and differentiation.
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| |
|
| Overall design |
Identification of Brf1 and Brf2 mRNA targets
|
| |
|
| Contributor(s) |
Tan F, Elowitz M |
| Citation(s) |
24733888 |
| Submission date |
Aug 14, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Frederick E Tan |
| E-mail(s) |
ftan@caltech.edu
|
| Phone |
626-395-5969
|
| Organization name |
California Institute of Technology
|
| Department |
Biology and Applied Physics
|
| Lab |
Michael Elowitz
|
| Street address |
1200 E. California Blvd, M/C 114-96
|
| City |
Pasadena |
| State/province |
CA |
| ZIP/Postal code |
91125 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
|
| Samples (6)
|
|
| Relations |
| SRA |
SRP014839 |
| BioProject |
PRJNA172921 |
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