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Series GSE39884 Query DataSets for GSE39884
Status Public on Mar 22, 2018
Title Small RNAs in undifferentiated and differentiating mouse embryonic stem cells
Organism Mus musculus
Experiment type Non-coding RNA profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary We report the identification of small RNAs in undifferentiated (d0) and differentiating (d4) mouse embryonic stem (ES) cells using high-throughput sequencing. The goal of this study was to identify small RNAs involved in X-chromosome inactivation (XCI). We have identified a subset of small RNAs that are generated from transposon sequences and map to the X-chromosome, suggesting their involvement in transposon control on the inactivating X-chromosome.
Overall design Examination of 5 small RNA and 4 RNA-seq libraries in 3 ES cell states.
Contributor(s) Kim DH, Marinov G
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Submission date Aug 03, 2012
Last update date May 15, 2019
Contact name Diane E Trout
Organization name California Institute of Technology
Department Biology
Lab Wold
Street address 1200 E California Blvd M/C 156-29
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
Platforms (2)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (9)
GSM980692 2 d4 M2 sRNA
GSM980693 3 d0 ML sRNA
GSM980694 4 d0 M2 sRNA
BioProject PRJNA171949
SRA SRP014691

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Supplementary file Size Download File type/resource
GSE39884_RAW.tar 253.2 Mb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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