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Series GSE39629 Query DataSets for GSE39629
Status Public on Jan 01, 2013
Title Esophageal epithelium of 12 weeks old mice (WT, Nrf2-/-) on C57BL background with or without gastroesophageal reflux for 4 weeks.
Organism Mus musculus
Experiment type Expression profiling by array
Summary Transcriptional profiling of adult esophageal epithelium comparing wild-type mice with Nrf2-/- mice with or without gastroesophageal reflux for 4 weeks. Goal was to determine the role of Nrf2 on the barrier function of mouse esophageal epithelium.
Overall design Two-class comparisons. Wild-type/without reflux vs. Nrf2-/-/without reflux; Wild-type/gastric reflux vs. Nrf2-/-/gastric reflux; Wild-type/duodenal reflux vs. Nrf2-/-/duodenal reflux; Wild-type/mixed reflux vs. Nrf2-/-/mixed reflux. Biological replicates: 3 replicates for each group.
Contributor(s) Chen H, Chen XL
Citation(s) 23639809, 23676441
Submission date Jul 25, 2012
Last update date Jan 12, 2017
Contact name Hao Chen
Organization name North Carolina Central University
Department BBRI
Lab Xiaoxin Luke Chen's Lab
Street address 700 George Street
City Durham
ZIP/Postal code 27707
Country USA
Platforms (1)
GPL7202 Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Probe Name version)
Samples (24)
GSM973395 Wild-type/without reflux replicate 1
GSM973396 Wild-type/without reflux replicate 2
GSM973397 Wild-type/without reflux replicate 3
BioProject PRJNA171332

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39629_RAW.tar 377.1 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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