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Series GSE38892 Query DataSets for GSE38892
Status Public on Jul 01, 2012
Title Analysis of Pro-Inflammatory Gene Activation and RNA Processing by RNAseq of Nascent Transcripts [supplement]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Note: These datasets are in supplement to, but separate from, Geo GSE32916. We examined pro-inflammatory gene activation in activated wildtype and IFNAR-/- murine macrophages by performing RNA-Seq with poly(A) enriched transcripts. This experimental strategy allowed a global, high-resolution analysis of the transcriptional regulation of diverse classes of co-expressed genes and allowed us to identify co-expressed gene classes that may depend on IFN-signaling for its expression. The results provide quantitative insights into the relationship between transcription and distinct promoter and chromatin properties.
Overall design RNA-seq of poly(A) enriched RNA from five stimulation time-points in wildtype and IFNAR-/- macrophages
Contributor(s) Smale ST, Tong A, Bhatt DM
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Submission date Jun 22, 2012
Last update date Jun 16, 2023
Contact name Stephen Smale
Organization name UCLA
Street address 675 Charles E. Young Drive South
City Los Angeles
ZIP/Postal code 90095
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (10)
GSM951559 WT0
GSM951560 WT30
GSM951561 WT60
BioProject PRJNA169142
SRA SRP013877

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Supplementary file Size Download File type/resource
GSE38892_RAW.tar 621.5 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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