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Series GSE37979 Query DataSets for GSE37979
Status Public on Nov 26, 2012
Title Performance Comparison of the Affymetrix SNP6.0 and Cytogenetic 2.7M Whole-genome Microarrays in Complex Cancer Samples
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary We performed a comparison analysis of the Affymetrix arrays SNP6.0 genome wide array (SNP6.0) and cytogenetic 2.7M whole-genome array (Cyto2.7M) using nine human samples. We compared the two array types with respect to four parameters including the size and breakpoints of the alterations detected, the actual CN assigned to the CNVs as well as long stretches of loss of heterozygosity. Overall, we found very good consistency between the two types of array on all parameters compared, even in regions with very complex changes.

This SuperSeries is composed of the SubSeries listed below.
Overall design Refer to individual Series
Contributor(s) Bødker JS, Gyrup C, Johansen P, Schmitz A, Madsen J, Johnsen HE, Boegsted M, Dybkær K, Nyegaard M
Citation(s) 23182917
Submission date May 14, 2012
Last update date Nov 27, 2018
Contact name Julie Støve Bødker
Organization name Aalborg University Hospital
Department Department of Heamatology
Lab Research Laboratory
Street address Sdr. Skovvej 15
City Aalborg
ZIP/Postal code 9000
Country Denmark
Platforms (2)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
GPL11157 [Cytogenetics_Array] Affymetrix Cytogenetics Whole-Genome 2.7M Array
Samples (18)
GSM931247 BB39
GSM931248 H35
GSM931249 H285
This SuperSeries is composed of the following SubSeries:
GSE37977 SNP6.0 copy number analysis of eight diffuse large B-cell samples and one matched blood sample
GSE37978 Cyto2.7M copy number analysis of eight diffuse large B-cell samples and one matched blood sample
BioProject PRJNA167153

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Supplementary file Size Download File type/resource
GSE37979_RAW.tar 1.1 Gb (http)(custom) TAR (of CEL, CNCHP, CYCHP)

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