NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE36967 Query DataSets for GSE36967
Status Public on Apr 03, 2012
Title Affymetrix SNP 6.0 profiles of 10 Human B-NHL lines
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary B-cell Non Hodgkin Lymphoma are a heterogenous group chracterized by a variety of genetic changes, including translocations, deletions and amplifications. Here we analyzed 10 B-NHL lines by Affymetrix SNP 6.0 to detect copy number changes. Specifically, we aim to identify cell lines suitable for testing the consequences of acute reintroduction of candidate tumor suppressor genes as they harbor deletions which include the candidate gene(s).
 
Overall design 10 BNHL cell lines were grown in standard cell culture conditions. Genomic DNA was exptracted from frozen pellets and analyzed for copy number variations with Affymetrix SNP 6.0 Arrays
 
Contributor(s) Scuoppo C, Lowe SW
Citation(s) 22722845
Submission date Mar 30, 2012
Last update date Nov 27, 2018
Contact name Claudio Scuoppo
E-mail(s) scuoppo@gmail.com
Organization name Cold Spring Harbor
Lab Scuoppo
Street address 1 Bungtown Rd
City Cold Spring Harbor
State/province -
ZIP/Postal code 11724
Country USA
 
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (10)
GSM907517 GRANTA-519
GSM907518 KARPAS-422
GSM907519 JEKO-1
Relations
BioProject PRJNA157509

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE36967_RAW.tar 796.3 Mb (http)(custom) TAR (of CEL, TXT)
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap