GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE36799 Query DataSets for GSE36799
Status Public on Aug 28, 2012
Title Long non-coding RNAs from divergent transcription of protein-coding genes
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary A remarkable number of long non-coding RNA (lncRNA) species have been identified in mammalian cells, but the genomic origins of these molecules in individual cell types is poorly understood. As a prerequisite to studying the transcriptional regulation of lncRNAs, we conducted a comprehensive analysis of the genomic origins of lncRNAs expressed in embryonic stem cells (ESCs).
Overall design Polyadenylated RNA and total RNA depleted of ribosomal content was used for preparation of two independent sequencing libraries
Contributor(s) Sigova A, Young RA
Citation(s) 23382218
Submission date Mar 26, 2012
Last update date May 15, 2019
Contact name Richard A Young
Phone 617-258-5219
Organization name Whitehead Institute for Biomedical Research
Lab Young Lab
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (2)
GSM903662 PolyA_RNA
GSM903663 Ribo-depleted_RNA
BioProject PRJNA156995
SRA SRP011978

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE36799_RAW.tar 271.0 Mb (http)(custom) TAR (of BEDGRAPH)
GSE36799_Supplemental_DataFile_mm9_Initial_pool_of_mouse_ESC_RNA.bed.gz 2.3 Mb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap