NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE36114 Query DataSets for GSE36114
Status Public on Feb 28, 2012
Title Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells
Organisms Homo sapiens; Sus scrofa; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary Genome-wide analysis of histone modification (H2AZ, H3K27ac, H3K27me3, H3K36me3, H3K4me1, H3K4me2, H3K4me3 and H3K9me3), protein-DNA binding (TAF1, P300, Pou5f1 and Nanog), cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells
We generated histone modification data (H2AZ, H3K27ac, H3K27me3, H3K36me3, H3K4me1, H3K4me2, H3K4me3 and H3K9me3) and protein-DNA binding data (TAF1, P300, Pou5f1 and Nanog) using Chromatin Immunoprecipitation followed by short sequencing (ChIP-seq), cytosine methylation data using methylated DNA immunoprecipitation followed by sequencing (MeDIP-seq) and DNA digestion by methyl-sensitive restriction enzymes followed by sequencing (MRE-seq), transcriptome data with RNA short sequencing (RNA-seq) in human embryonic stem cells, mouse embryonic stem cells, pig induced pluripotent stem cells and mouse embryonic stem cells under activin-A-induced-differentiation.
 
Overall design Examination of 8 histone modifications, 4 protein-DNA binding, cytosine methylation and transcriptome in human embryonic stem cells, mouse embryonic stem cells, pig induced pluripotent stem cells and mouse embryonic stem cells under activin-A-induced-differentiation.
 
Contributor(s) Xiao S, Xie D, Cao X, Yu P, Xing X, Chen C, Musselman M, Xie M, West FD, Lewin HA, Wang T, Zhong S
Citation(s) 22682255
Submission date Feb 27, 2012
Last update date May 15, 2019
Contact name Pengfei Yu
E-mail(s) yupf05@gmail.com
Organization name University of California San Diego
Department Bioengineering
Lab Dr. Sheng Zhong
Street address 9500 Gilman Drive MC 0419
City La Jolla
State/province CA
ZIP/Postal code 92093-0419
Country USA
 
Platforms (6)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
GPL9250 Illumina Genome Analyzer II (Mus musculus)
GPL10945 Illumina Genome Analyzer II (Sus scrofa)
Samples (47)
GSM881344 E14_TAF1_ChIP-seq
GSM881345 E14_IgG_ChIP-seq
GSM881346 E14_Day0_MeDIP-seq
Relations
SRA SRP011077
BioProject PRJNA152995

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE36114_RAW.tar 21.5 Gb (http)(custom) TAR (of BAM, BED, GTF, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap