|
| Status |
Public on Jun 22, 2012 |
| Title |
Genome-wide occupancy profile of Tbx3, Gata4, Nkx2-5 and p300 in adult mouse whole heart |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
The contraction pattern of the heart relies on the activation and conduction of the electrical impulse. Perturbations of cardiac conduction have been associated with congenital and acquired arrhythmias as well as cardiac arrest. The pattern of conduction depends on the regulation of heterogeneous gene expression by key transcription factors and transcriptional enhancers. Here, we assessed the genome-wide occupation of conduction system–regulating transcription factors TBX3, NKX2-5, and GATA4 and of enhancer-associated coactivator p300 in the mouse heart, uncovering cardiac enhancers throughout the genome.
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| |
|
| Overall design |
Examination of 3 cardiac transcription factors and p300 in adult mouse heart
|
| |
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| Contributor(s) |
van den Boogaard M, Barnett P, Christoffels VM |
| Citation(s) |
22706305 |
| Submission date |
Jan 17, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Vincent M. Christoffels |
| E-mail(s) |
v.m.christoffels@amsterdamumc.nl
|
| Phone |
0205667821
|
| Organization name |
Amsterdam UMC
|
| Department |
Medical Biology
|
| Lab |
Vincent Christoffels
|
| Street address |
Meibergdreef 15 K2-159
|
| City |
Amsterdam |
| State/province |
N/A (NA) |
| ZIP/Postal code |
1105 AZ |
| Country |
Netherlands |
| |
|
| Platforms (2) |
| GPL9318 |
AB SOLiD System 3.0 (Mus musculus) |
| GPL11002 |
Illumina Genome Analyzer IIx (Mus musculus) |
|
| Samples (5)
|
|
| Relations |
| SRA |
SRP010365 |
| BioProject |
PRJNA150771 |
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