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Series GSE33848 Query DataSets for GSE33848
Status Public on Nov 22, 2011
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary East-Asian (EA) patients with Non Small Cell Lung Cancer (NSCLC) are associated with a high proportion of non-smoking women, EGFR activating somatic mutations, and clinical responses to tyrosine kinase inhibitors. We identify copy number alterations specific to EA and Western European (WE) NSCLCs and conducted an integrative analysis using transcritomic data for identifying copy-number-driven candidate genes.
Samples were hybridized to Affymetrix Genome-Wide Human SNP 6.0 arrays according to the manufacturer’s specifications in the same center.
Overall design 226 lung adenocarcinomas (90 East-Asian and 136 Western-European) were analyzed for copy-number aberrations (CNAs) using a common high resolution SNP microarray platform.
Contributor(s) Broët P, Dalmasso C, Tan E, Alifano M, Zhang S, Wu J, Lee M, Régnard J, Lim D, Koong H, Agasthian T, Miller LD, Lim E, Camilleri-Broët S, Tan P
Citation(s) 21521776
Submission date Nov 21, 2011
Last update date Nov 27, 2018
Contact name Cyril Dalmasso
Organization name Université d'Evry Val d'Essonne
Department Mathématiques
Lab Statistique et Génome
Street address 23 bd de France
City Evry
ZIP/Postal code 91037
Country France
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (226)
GSM837646 East Asian 3
GSM837647 East Asian 6
GSM837648 East Asian 7
BioProject PRJNA148175

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33848_RAW.tar 6.2 Gb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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