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Series GSE33419 Query DataSets for GSE33419
Status Public on Jun 15, 2017
Title In vivo genome-wide chromatin immunoprecipitation for the chondrogenic transcription factors, Sox9, Sox5 and Sox6
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Tissue ChIP-seq was performed on transcription factor Sox5, Sox6 and Sox9 using limbs and tails from E13.5 mouse embryos to find their in vivo binding sites in the genome
Overall design Sox9 and Sox6 ChIP-seq was performed on wildtype mice whereas Sox5 ChIP-seq was done using transgenic wildtype mice.
Contributor(s) Yap S, Lee W, Kraus P, Lufkin T
Citation(s) 28630873
Submission date Nov 02, 2011
Last update date May 15, 2019
Contact name Thomas Lufkin
Organization name Clarkson University
Department Biology
Lab Stem Cells & Regenerative Medicine
Street address 8 Clarkson Avenue
City Potsdam
State/province NY
ZIP/Postal code 13699
Country USA
Platforms (2)
GPL9250 Illumina Genome Analyzer II (Mus musculus)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (6)
GSM826703 CME018
GSM826704 CME019
GSM826705 CME179
SRA SRP009189
BioProject PRJNA148915

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33419_RAW.tar 1.4 Gb (http)(custom) TAR (of BED, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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