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Series GSE33184 Query DataSets for GSE33184
Status Public on Oct 25, 2011
Title Retroviral mutagenesis in haploid ES cells
Organism Mus musculus
Experiment type Other
Summary Retroviral integration sites were mapped using inverse PCR to assess preferred integration sites of this virus in the genome after infection with the retrovirus and its impact on gene expression.
Overall design Inverse PCR was applied on genomic DNA to identify retroviral integration sites. Inverse PCR allows to identify multiple genomic insertions of a gene trap virus in parallel.
Contributor(s) Elling U, Stark A, Sommer A, Penninger J
Citation(s) 22136931
Submission date Oct 24, 2011
Last update date May 15, 2019
Contact name Ulrich Elling
Organization name IMBA
Lab Penninger
Street address Dr. Bohr-Gasse 3
City Vienna
ZIP/Postal code 1030
Country Austria
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (2)
GSM821480 sampling retroviral library
GSM821481 sequencing ricinus screen inversions
SRA SRP009175
BioProject PRJNA149205

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33184_RAW.tar 175.7 Mb (http)(custom) TAR (of TXT)
GSE33184_ricinus_top_insertions.bed.gz 4.3 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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