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Series GSE33136 Query DataSets for GSE33136
Status Public on Nov 01, 2011
Title Genome-wide Analysis of Nascent Transcription in Saccharomyces cerevisiae
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by high throughput sequencing
Summary We combined the nuclear run-on (NRO) assay which labels and captures nascent transcripts with high throughput DNA sequencing to examine transcriptional activity in Saccharomyces cerevisiae.
Overall design Examination of nascent transcripts and steady-state transcripts in exponentially growing and heat-shock treated yeast.
Contributor(s) Araya CL, McKinlay A, Fields S
Citation(s) 22384366
Submission date Oct 21, 2011
Last update date May 15, 2019
Contact name Carlos Araya
Organization name University of Washington
Department Genome Sciences
Lab Stanley Fields
Street address 1705 NE Pacific
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
Platforms (1)
GPL9377 Illumina Genome Analyzer II (Saccharomyces cerevisiae)
Samples (13)
GSM820643 Nuclear run-on RNA library 1
GSM820644 Nuclear run-on RNA library 2
GSM820645 Nuclear run-on RNA library 3
SRA SRP009043
BioProject PRJNA149379

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33136_GSM820643-GSM820645_mapexpression_rpm_xro0_q30-rDNA_sense_0_0_af200.nov.bed.gz 141.1 Kb (ftp)(http) BED
GSE33136_GSM820646-GSM820648_mapexpression_rpm_yrn0_q30-rDNA_sense_0_0_af200.nov.bed.gz 139.5 Kb (ftp)(http) BED
GSE33136_GSM820649-GSM820651_mapexpression_rpm_hsp0_q30-rDNA_sense_0_0_af200.nov.bed.gz 124.3 Kb (ftp)(http) BED
GSE33136_GSM820652-GSM820654_mapexpression_rpm_hsr0_q30-rDNA_sense_0_0_af200.nov.bed.gz 133.6 Kb (ftp)(http) BED
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